SplitSeek Tool name | SplitSeek |
---|
URL | http://solidsoftwaretools.com/gf/project/splitseek/ |
---|
Important features | 1. It is for de novo splice junction prediction.
2. It can be used to detect splicing events and transcripts.
3. It can be also applied to detect indels. |
---|
Citations | Ameur A, Wetterbom A, Feuk L, Gyllensten U. Global and unbiased detection of splice junctions from RNA-seq data. Genome Biol. 2010;11(3):R34. Epub 2010 Mar 17. PubMed PMID: 20236510; PubMed Central PMCID: PMC2864574. |
---|
Year of publication | 2010 |
---|
Rank by usage frequency | 100 |
---|
Comments | |
---|
Function | RNA seq alignment |
---|
Category | Free, Downloadable |
---|
License | GPL |
---|
Status | |
---|
Input file format | csFasta |
---|
Output file format | BED, BEDPE |
---|
Operating system | Not Applicable |
---|
Operating language | Perl |
---|
Platform | ABI SOLiD |
---|
Maintained by | Applied biosystems |
---|
Downloadable file format | |
---|
Submission file format | |
---|
| |